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You can visualize your results below. You can also download them for offline analysis.

Ligand file1skj_ligand.pdb
Receptor file1skj_receptor.pdb
Grid center ligand center : (-4.68, 60.79, -8.54)
Grid dimensions ligand-based : (85, 74, 62)
Grid dimensions (Å) (31.875, 27.75, 23.25)
Total runtime 00:06:28

For each ligand conformation, the binding score is reported in kcal/mol, and the heavy-atom RMSD to the original pdb conformation is reported in Å.

To move the protein-ligand complex: use 'Shift' + 'double-click' and then drag the complex to your preferred placement.

To rotate around the Z axis: hold 'Shift' and then drag horizontally.

For more things you can do within JSmol, click here.

RMSD values are calculated by comparing the original pdb conformation with each fragment conformation, considering all heavy atoms of the ligand.